TY - JOUR AU - Peng, H. PY - 2010 DA - 2010// TI - V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets JO - Nature Biotechnol VL - 28 UR - https://doi.org/10.1038/nbt.1612 DO - 10.1038/nbt.1612 ID - Peng2010 ER - TY - JOUR AU - Peng, H. PY - 2010a DA - 2010a// TI - Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq212 DO - 10.1093/bioinformatics/btq212 ID - Peng2010a ER - TY - JOUR AU - Li, A. PY - 2010 DA - 2010// TI - Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain JO - Science VL - 330 UR - https://doi.org/10.1126/science.1191776 DO - 10.1126/science.1191776 ID - Li2010 ER - TY - JOUR AU - Peng, H. PY - 2011 DA - 2011// TI - BrainAligner: 3D registration atlases of Drosophila brains JO - Nat Method VL - 8 UR - https://doi.org/10.1038/nmeth.1602 DO - 10.1038/nmeth.1602 ID - Peng2011 ER - TY - JOUR AU - Lee, T. -. C. PY - 1994 DA - 1994// TI - Building skeleton models via 3-D medial surface/axis thinning algorithms. CVGIP: graph JO - Model Image Process VL - 56 UR - https://doi.org/10.1006/cgip.1994.1042 DO - 10.1006/cgip.1994.1042 ID - Lee1994 ER - TY - JOUR AU - Palagyi, K. PY - 1998 DA - 1998// TI - A 3D 6-subiteration thinning algorithm for extracting medial lines JO - Pattern Recognit Lett VL - 19 UR - https://doi.org/10.1016/S0167-8655(98)00031-2 DO - 10.1016/S0167-8655(98)00031-2 ID - Palagyi1998 ER - TY - JOUR AU - Borgefors, G. PY - 1999 DA - 1999// TI - Computing skeletons in three dimensions JO - Pattern Recognition VL - 32 UR - https://doi.org/10.1016/S0031-3203(98)00082-X DO - 10.1016/S0031-3203(98)00082-X ID - Borgefors1999 ER - TY - JOUR AU - Al-Kofahi, K. A. PY - 2002 DA - 2002// TI - Rapid automated three-dimensional tracing of neurons from confocal image stacks JO - IEEE Trans Inf Technol Biomed VL - 6 UR - https://doi.org/10.1109/TITB.2002.1006304 DO - 10.1109/TITB.2002.1006304 ID - Al-Kofahi2002 ER - TY - JOUR AU - Streekstra, G. J. PY - 2002 DA - 2002// TI - Analysis of tubular structures in three-dimensional confocal images JO - Network VL - 13 UR - https://doi.org/10.1088/0954-898X_13_3_308 DO - 10.1088/0954-898X_13_3_308 ID - Streekstra2002 ER - TY - JOUR AU - Schmitt, S. PY - 2004 DA - 2004// TI - New methods for the computer assisted 3-D reconstruction of neurons from confocal image stacks JO - NeuroImage VL - 23 UR - https://doi.org/10.1016/j.neuroimage.2004.06.047 DO - 10.1016/j.neuroimage.2004.06.047 ID - Schmitt2004 ER - TY - JOUR AU - SantamarĂ­a-Pang, A. PY - 2007 DA - 2007// TI - Automatic centerline extraction of irregular tubular structures using probability volumes from multiphoton imaging JO - Proc Med Image Comput Comput-Assist Interv VL - 4792 ID - SantamarĂ­a-Pang2007 ER - TY - JOUR AU - Myatt, D. R. PY - 2006 DA - 2006// TI - Towards the automatic reconstruction of dendritic trees using particle filters JO - Nonlinear Stat Signal Process Workshop VL - 2006 UR - https://doi.org/10.1109/NSSPW.2006.4378852 DO - 10.1109/NSSPW.2006.4378852 ID - Myatt2006 ER - TY - JOUR AU - Evers, J. F. PY - 2005 DA - 2005// TI - Progress in functional neuroanatomy: precise automatic geometric reconstruction of neuronal morphology from confocal image stacks JO - J Neurophysiol VL - 93 UR - https://doi.org/10.1152/jn.00761.2004 DO - 10.1152/jn.00761.2004 ID - Evers2005 ER - TY - JOUR AU - Meijering, E. PY - 2004 DA - 2004// TI - Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images JO - Cytometry A VL - 58 UR - https://doi.org/10.1002/cyto.a.20022 DO - 10.1002/cyto.a.20022 ID - Meijering2004 ER - TY - JOUR AU - Weaver, C. M. PY - 2004 DA - 2004// TI - Automated Algorithms for Multiscale Morphometry of Neuronal Dendrites JO - Neural Computation VL - 16 UR - https://doi.org/10.1162/089976604323057425 DO - 10.1162/089976604323057425 ID - Weaver2004 ER - TY - JOUR AU - Wearne, S. PY - 2005 DA - 2005// TI - New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales JO - Neuroscience VL - 136 UR - https://doi.org/10.1016/j.neuroscience.2005.05.053 DO - 10.1016/j.neuroscience.2005.05.053 ID - Wearne2005 ER - TY - JOUR AU - Zhao, T. PY - 2011 DA - 2011// TI - Automated reconstruction of neuronal morphology based on local geometrical and global structural models JO - Neuroinformatics VL - 9 UR - https://doi.org/10.1007/s12021-011-9120-3 DO - 10.1007/s12021-011-9120-3 ID - Zhao2011 ER - TY - JOUR AU - Zhang, Y. PY - 2008 DA - 2008// TI - (2008) 3D axon structure extraction and analysis in confocal fluorescence microscopy images JO - Neural Comput VL - 20 UR - https://doi.org/10.1162/neco.2008.05-07-519 DO - 10.1162/neco.2008.05-07-519 ID - Zhang2008 ER - TY - JOUR AU - Xie, J. PY - 2010 DA - 2010// TI - Automatic neuron tracing in volumetric microscopy images with anisotropic path searching JO - Med Image Comput Comput-Assist Interv - MICCAI 2010 PT II VL - 6362 UR - https://doi.org/10.1007/978-3-642-15745-5_58 DO - 10.1007/978-3-642-15745-5_58 ID - Xie2010 ER - TY - JOUR AU - Peng, H. PY - 2011 DA - 2011// TI - Automatic 3D neuron tracing using all-path pruning JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/btr237 DO - 10.1093/bioinformatics/btr237 ID - Peng2011 ER - TY - JOUR AU - Donohue, D. E. PY - 2011 DA - 2011// TI - Automated reconstruction of neuronal morphology: an overview JO - Brain Res Rev VL - 67 UR - https://doi.org/10.1016/j.brainresrev.2010.11.003 DO - 10.1016/j.brainresrev.2010.11.003 ID - Donohue2011 ER - TY - JOUR AU - Cannon, R. C. PY - 1998 DA - 1998// TI - An on-line archive of reconstructed hippocampal neurons JO - J Neurosci Methods VL - 1998 UR - https://doi.org/10.1016/S0165-0270(98)00091-0 DO - 10.1016/S0165-0270(98)00091-0 ID - Cannon1998 ER - TY - JOUR AU - Sato, Y. PY - 1998 DA - 1998// TI - 3D multi-scale line filter for segmentation and visualization of curvilinear structure in medical images JO - Med Image Analysis VL - 2 UR - https://doi.org/10.1016/S1361-8415(98)80009-1 DO - 10.1016/S1361-8415(98)80009-1 ID - Sato1998 ER - TY - JOUR AU - Descoteaux, M. PY - 2004 DA - 2004// TI - A multi-scale geometric flow for segmenting vasculature in MRI JO - Comput Vis Mathematical Method Med Biomed Image Analysis Lecture Notes Comput Sci VL - 3117 UR - https://doi.org/10.1007/978-3-540-27816-0_15 DO - 10.1007/978-3-540-27816-0_15 ID - Descoteaux2004 ER - TY - JOUR AU - Yuan, Y. PY - 2008 DA - 2008// TI - Multi-scale model-based vessel enhancement using local line integrals JO - 30th Annu Int IEEE EMBS Conf Vancouver VL - 2008 ID - Yuan2008 ER - TY - JOUR AU - Borgefors, G. PY - 1986 DA - 1986// TI - (1986) Distance transformations on digital images JO - Comput Vis Graph Image Process VL - 34 UR - https://doi.org/10.1016/S0734-189X(86)80047-0 DO - 10.1016/S0734-189X(86)80047-0 ID - Borgefors1986 ER - TY - JOUR AU - Peng, H. PY - 2011 DA - 2011// TI - Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions JO - Neuroinformatics VL - 9 UR - https://doi.org/10.1007/s12021-010-9090-x DO - 10.1007/s12021-010-9090-x ID - Peng2011 ER - TY - JOUR AU - Rodriguez, A. PY - 2006 DA - 2006// TI - Rayburst sampling, an algorithm for automated three-dimensional shape analysis from laser-scanning microscopy images JO - Nat Protoc VL - 1 UR - https://doi.org/10.1038/nprot.2006.313 DO - 10.1038/nprot.2006.313 ID - Rodriguez2006 ER - TY - CHAP AU - Gonzalez-Bellido, P. PY - 2012 DA - 2012// TI - Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction BT - PNAS ID - Gonzalez-Bellido2012 ER - TY - JOUR AU - Huynh-Thu, Q. PY - 2008 DA - 2008// TI - Scope of validity of PSNR in image/video quality assessment JO - Electron Lett VL - 44 UR - https://doi.org/10.1049/el:20080522 DO - 10.1049/el:20080522 ID - Huynh-Thu2008 ER - TY - JOUR AU - Jefferis, G. PY - 2007 DA - 2007// TI - Comprehensive maps of Drosophila higher olfactory centers: Spatially segregated fruit and pheromone representation JO - Cell VL - 128 UR - https://doi.org/10.1016/j.cell.2007.01.040 DO - 10.1016/j.cell.2007.01.040 ID - Jefferis2007 ER -