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Table 1 Meanings of the fields in annotation entry

From: CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes

Fields of annotation entry

Meanings of the fields

Normalized FeatureName

Normalized feature name of a segment sequence of the genome

Start

Starting position of the segment sequence on the chloroplast genome

End

Ending position of the segment sequence on the chloroplast genome

FeatureName/Location

Potential feature name or location identifier of the segment sequence of the genome

LengthRatio

|End-Start|/L, L indicated the length of the feature sequence compared to the segment sequence of the genome

Identity

Nmatch/Nmissmatch, Nmatch and Nmissmatch indicated the number of match and mismatch bases of the segment sequence respectively in sequence alignment

Score

Score obtained in sequence alignment

Expectation

Expectation value computed in sequence alignment