Table 4 Comparison among some different clustering strategies for protein complex problem.
Techniques | Protein Complexes | Protein Fraction | P-Value |
|---|---|---|---|
G2/M TRANSITION OF MITOTIC CELL CYCLE | |||
MCL (suggested) | app1, swe1, hsl7 | 2/3 | 2.17e-03 |
RNSC | app1, swe1, hsl7 | 2/3 | 2.17e-03 |
MCODE | -- | 2/3 | 2.17e-03 |
ACTIN FILAMENT DEPOLYMERIZATION | |||
MCL (suggested) | act1, srv2, bnr1, bni1, cof1, trm5, aip1 | 4/7 | 4.92e-10 |
RNSC | act1, srv2, aip1, cof1 | 4/4 | 2.94e-05 |
MCODE | -- | -- | 5.25e-03 |
ACTIN CYTOSKELETON ORGANIZATION | |||
MCL (suggested) | sla2, abp1, yor284w, rvs167, ysc84, sla1, ynl086w, ypl246c, rvs161, acf2, ybr108w, yjr083c, ygr268c, ypr171w, yhr133c | 7/15 | 4.65e-08 |
RNSC | sla2, yor284w, rvs167, ysc84, sla1, ygr268c, abp1 | 4/7 | 5.93e-05 |
MCODE | abp1, app1, rvs167, act1, yor284w, ysc84 | 4/6 | 1.93e-05 |
ACTIN POLYMERIZATION OR DEPOLYMERIZATION | |||
MCL (suggested) | crn1, svl3 | 0/2 | > 0.01 |
RNSC | crn1, svl3 | 0/2 | > 0.01 |
MCODE | -- | 0/2 | > 0.01 |
RHO PROTEIN SIGNAL TRASDUCTION | |||
MCL (suggested) | -- | -- | -- |
RNSC | cla4, bni1, cdc42, gic2 | 3/4 | 1.04e-05 |
MCODE | cla4, cdc42, gic2 | 3/3 | 1.76e-06 |