SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS

BMC Bioinformatics

Table 3 SNPranker results comparison with a GWAS for Bipolar Disorder.

Gene	SNP ID	Chr	Position		Strand	Alleles	Function
ARNTL	rs900145	11	13250480	13250481	-	A/G	unknown (intergenic)
HTR2A	rs1575891	13	47096716	47096717	+	C/T	unknown (intergenic)
KLF12	rs9543325	13	72814628	72814629	+	C/T	unknown (intergenic)
KLF12	rs1886512	13	73418186	73418187	+	A/T	intron
RORA	rs3743266	15	58568804	58568805	-	A/G	unknown (UTR-3)
RORA	rs340029	15	58682256	58682257	+	C/T	intron
RORA	rs3784609	15	58697841	58697842	-	A/G	intron
RORA	rs11071559	15	58857279	58857280	+	C/T	intron
RORA	rs12912233	15	59054387	59054388	+	C/T	intron
RORA	rs809736	15	59117079	59117080	+	A/G	intron

Given the best results of the GWAS concerning the Bipolar Disorder [53], the table shows the SNPs that have been correctly predicted in our final SNPs table.

ISSN: 1471-2105