From: Efficient digest of high-throughput sequencing data in a reproducible report
Source | Sequencer | Aligner | Paired-end | Avg. length (bp) | Total bases (million) | Total bases (billion) | BAM size (gb) | Runtime (minute) |
---|---|---|---|---|---|---|---|---|
1000 Genomes | 454 | MOSAIK | No | 332.10 | 1.24 | 0.41 | 0.15 | 8.33 |
1000 Genomes | 454 | ssaha | No | 390.00 | 9.81 | 3.83 | 3.31 | 11.66 |
CHOP project | SOLiD | Tophat | No | 50.00 | 35.93 | 1.80 | 1.77 | 13.62 |
1000 Genomes | Illumina | maq | Yes | 76.00 | 14.60 | 1.11 | 2.00 | 13.99 |
CHOP project | SOLiD | LifeScope | No | 47.71 | 52.26 | 2.49 | 4.09 | 18.76 |
1000 Genomes | Illumina | maq | Yes | 51.00 | 106.70 | 5.44 | 8.25 | 23.91 |
CHOP project | Illumina | Novoalign | Yes | 92.92 | 226.50 | 21.05 | 28.89 | 33.13 |
1000 Genomes | Illumina | maq | Yes | 37.00 | 192.02 | 7.10 | 11.10 | 34.25 |
CHOP project | Illumina | Novoalign | Yes | 93.34 | 239.21 | 22.33 | 30.73 | 34.29 |