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Table 1 Valid and correct alignments with gap opening penalty 10.0 and gap extension penalty 0.5.

From: libgapmis: extending short-read alignments

Programme

Valid

Correct

Needle

94,552

94,516

Gapmis

100,000

99,996

  1. The valid and correct alignments of 100, 000 pairs of 100 bp-long generated sequences with gap opening penalty 10.0 and gap extension penalty 0.5.
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BMC Bioinformatics

ISSN: 1471-2105

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