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Table 2 Valid and correct alignments with gap opening penalty 8.0 and gap extension penalty 1.0.

From: libgapmis: extending short-read alignments

Programme

Valid

Correct

needle

76,512

76,501

gapmis

100,000

99,997

  1. The valid and correct alignments of 100, 000 pairs of 100 bp-long generated sequences with gap opening penalty 8.0 and gap extension penalty 1.0.