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Table 3 Valid and correct alignments with gap opening penalty 12.0 and gap extension penalty 0.5.

From: libgapmis: extending short-read alignments

Programme Valid Correct
needle 95,452 95,427
gapmis 100,000 99,999
  1. The valid and correct alignments of 100, 000 pairs of 100 bp-long generated sequences with gap opening penalty 12.0 and gap extension penalty 0.5.