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Table 1 Summary of gene lists used in this study to validate the performance of the proposed method in comparison with existing algorithms

From: Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures

Experiment description Enriched
miRNAs
Number of reported genes Reference
HeLa cells transfected with miR-1 miR-1 96 repressed genes [35]
HeLa cells transfected with miR-124 miR-124 174 repressed genes [35]
HeLa cells transfected with miR-373 miR-373 65 repressed genes [35]
LNCaP cells treatedwith pre-miR-1 miR-1 88 repressed genes and 80
upregulated genes
[36]
LNCaP cells treatedwith pre-miR-206 miR-206 83 repressed genes and 62
upregulated genes
[36]
LNCaP cells treatedwith pre-miR-27b miR-27b 51 repressed genes and 157
upregulated genes
[36]
LNCaP cells transfected with pre-miR-32 miR-32 67 repressed genes [37]
LNCaP cells transfected with pre-miR-148a miR-148a 79 repressed genes [37]
Genes predicted to be targets of 11
prostate miRNAs extracted from PRedNet
miR(1, 204,
205, 143, 145,
221, 222,
27b, 133b, 31,
let-7
1854 [5, 12, 38]
Altered genes in prostate cancer using
Taylor data
  480 downregulated in prostate and 51 upregulated in prostate 269 downregulated genes in PCa samples that have BCR recurrence [39]
Genes associated with BCR event in
prostate cancer
   [39]