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Table 12 Characteristics of mined sequential patterns in GSE11342 (SWS = variable, maxTC = ∞ days, minSup p = 95% and minTSupp = 100%)

From: An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

  0d 3d 6d 9d 12d 15d 18d 21d 24d 27d 30d 33d 36d 39d 42d 45d 48d 51d 54d 57d 60d 63d ≥ 66d
# of CTGR-SPs 214 211 221 194 154 135 131 127 125 128 125 127 136 157 157 163 163 163 163 187 190 198 217
# of longest CTGR-SPs 28 25 25 82 37 17 17 14 10 13 13 7 10 157 157 163 163 163 163 187 190 198 217
Maximal length of CTGR-SPs 4 4 4 3 3 3 3 3 3 3 2 2 2 1 1 1 1 1 1 1 1 1 1
# of genes in CTGR-SPs 136 134 136 134 127 124 123 121 120 121 119 121 125 132 132 132 132 132 132 136 136 136 136
# of genes in longest CTGR-SPs 3 3 3 15 10 9 9 9 7 8 5 5 4 7 7 7 7 7 7 7 7 7 7
# of gene pairs in lonest CTGR-SPs 21 19 19 59 26 16 16 14 10 12 10 10 12 0 0 0 0 0 0 0 0 0 0
-Log(p-value)†† 1.26 1.37 1.37 0.70 0.00 0.00 0.00 0.00 0.86 0.86 0.65 0.53 0.40 - - - - - - - - - -
  1. d: # of days of SWS; ††: test longest CTGR-SPs-involved genes in immune response using GO enrichment analysis; -: no p-values.