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Table 8 Characteristics of mined sequential patterns (minSup p = variable and minTSupp = 100%)

From: An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

 

GSE6377

GSE11342

 

100%

95%

90%

85%

80%

75%

70%

100%

95%

90%

85%

80%

75%

70%

# of CTGR-SPs

417

426

4,762

5,090

181,295

181,170

6,948,828

32

224

964

3,077

11,105

6,053

17,412

# of longest CTGR-SPs

81

81

59

59

176,552

176,552

208,297

2

28

203

1,717

4

283

4,713

Maximal length of CTGR-SPs

4

4

6

6

6

6

7

4

4

4

4

5

5

5

# of genes in CTGR-SPs

212

211

1,006

996

2,821

2,826

5,313

25

138

466

1,132

2,011

2,801

4,142

# of genes in longest CTGR-SPs

14

14

11

11

214

214

77

2

3

16

67

3

30

160

# of gene pairs in lonest CTGR-SPs

70

70

58

58

4,077

4,077

1,548

4

21

128

672

6

119

1,119

-Log(p-value)

0.34†

0.34†

0.00†

0.00†

0.55†

0.55†

0.29†

0.00††

1.26††

0.26††

0.91††

0.00††

1.58††

4.11††

# of GSP

-

-

-

-

-

-

-

-

-

-

-

-

-

-

# of PrefixSpan

-

-

-

-

-

-

-

-

-

-

-

-

-

-

  1. %: minSupp value presented as percentage; †: test longest CTGR-SPs-involved genes in inflammatory response using GO enrichment analysis; ††: test longest CTGR-SPs-involved genes in immune response using GO enrichment analysis; -: no complete patterns.