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Table 8 Characteristics of mined sequential patterns (minSup p = variable and minTSupp = 100%)

From: An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

  GSE6377 GSE11342
  100% 95% 90% 85% 80% 75% 70% 100% 95% 90% 85% 80% 75% 70%
# of CTGR-SPs 417 426 4,762 5,090 181,295 181,170 6,948,828 32 224 964 3,077 11,105 6,053 17,412
# of longest CTGR-SPs 81 81 59 59 176,552 176,552 208,297 2 28 203 1,717 4 283 4,713
Maximal length of CTGR-SPs 4 4 6 6 6 6 7 4 4 4 4 5 5 5
# of genes in CTGR-SPs 212 211 1,006 996 2,821 2,826 5,313 25 138 466 1,132 2,011 2,801 4,142
# of genes in longest CTGR-SPs 14 14 11 11 214 214 77 2 3 16 67 3 30 160
# of gene pairs in lonest CTGR-SPs 70 70 58 58 4,077 4,077 1,548 4 21 128 672 6 119 1,119
-Log(p-value) 0.34 0.34 0.00 0.00 0.55 0.55 0.29 0.00†† 1.26†† 0.26†† 0.91†† 0.00†† 1.58†† 4.11††
# of GSP - - - - - - - - - - - - - -
# of PrefixSpan - - - - - - - - - - - - - -
  1. %: minSupp value presented as percentage; †: test longest CTGR-SPs-involved genes in inflammatory response using GO enrichment analysis; ††: test longest CTGR-SPs-involved genes in immune response using GO enrichment analysis; -: no complete patterns.