Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks

Table 7 The effect of the number of BLAST-inferred edges k (Dataset A: M.musculus)

parameter k	molecular function				biological process			cellular component
parameter k	1st	2nd	3rd	1st	2nd	3rd	4th	1st	2nd	3rd
Origin	0.282	0.124	0.099	0.389	0.233	0.127	0.087	1.632	0.449	0.237
k=1	0.391	0.237	0.150	0.470	0.255	0.147	0.115	1.708	0.497	0.270
k=5	0.470	0.285	0.230	0.563	0.297	0.177	0.135	2.020	0.670	0.319
k=10	0.491	0.242	0.212	0.538	0.316	0.142	0.109	1.943	0.579	0.293
k=15	0.456	0.266	0.203	0.493	0.339	0.151	0.123	1.857	0.620	0.331

ISSN: 1471-2105