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Table 2 Sensitivity of DESeq and NOISeq gene-calling and gene-expression levels

From: Comparative studies of differential gene calling using RNA-Seq data

 

Threshold valuesa

Gene group

0.005

0.01

0.05

0.1

0.2

0.3

0.4

0.5

[DESeq]

        

     Over-expressed

0.21

0.26

0.36

0.44

0.51

0.57

0.63

0.66

   Under-expressed

0.19

0.23

0.32

0.39

0.46

0.52

0.57

0.62

[NOISeq]

        

   Over-expressed

0.00

0.00

0.00

0.05

0.17

0.28

0.38

0.47

   Under-expressed

0.00

0.00

0.00

0.03

0.14

0.25

0.35

0.46

  1. aq-value for DESeq and 1- P NOI for NOISeq.