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Table 3 Performance of DESeq and NOISeq compared against the microarray study.

From: Comparative studies of differential gene calling using RNA-Seq data

 

Threshold valuesa

 

0.001

0.005

0.01

0.05

0.1

0.2

[DESeq]

      

   Precision

0.94

0.93

0.90

0.90

0.89

0.88

      Recall

0.01

0.02

0.02

0.04

0.04

0.05

[NOISeq]

      

   Precision

0.94

0.93

0.94

0.94

0.92

0.86

      Recall

0.002

0.01

0.01

0.03

0.05

0.12

  1. aq-value for DESeq and 1- P NOI for NOISeq.
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BMC Bioinformatics

ISSN: 1471-2105

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