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Table 5 Performance consistency with DESeq and NOISeq on the pea aphid data

From: Comparative studies of differential gene calling using RNA-Seq data

 

Threshold valuesa

 

0.001

0.005

0.01

0.05

0.1

0.2

[DESeq]

      

  Average precision

0.52

0.52

0.53

0.52

0.51

0.48

    Average recall

0.27

0.29

0.29

0.32

0.32

0.33

[NOISeq]

      

  Average precision

0.00

0.02

0.03

0.17

0.22

0.25

    Average recall

0.00

0.33

0.33

0.38

0.39

0.43

  1. aq-value for DESeq and 1- P NOI for NOISeq.
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BMC Bioinformatics

ISSN: 1471-2105

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