Skip to main content

Table 1 Summary of tasks for TLX evaluation of PSPACE.

From: Towards human-computer synergetic analysis of large-scale biological data

Task Alternate Time
Allocated
Task Description
Charting Protein Classes VisIT 10 min Users inspect MPSS and need to determine the rough locations of protein classes at the top of CATH and SCOP hierarchies
Charting Protein Superfamiles VisIT 10 min As above, for two selected protein superfamiles:
(Immunoglobins and PH-domain)
Structure Classification RCSB PDB 15 min Users are presented with two unclassified proteins and have to assign them likely classifications (PDB IDs 2cry.A, 2hvv.A)
Function Prediction RCSB PDB 15 min Users are presented with two proteins of unknown function and have to assign them likely functions (PDB IDs 3fh1.A, 3lno.A)