|
Features
|
Window size
|
CD-5p (sequence-based)
|
CD-3p (sequence-based)
|
|---|
| | |
Sn
|
Sp
|
Ac
|
Mc
|
Sn
|
Sp
|
Ac
|
Mc
|
|---|
|
Mono
|
8
|
58.20
|
61.80
|
60.00
|
0.20
|
58.38
|
59.28
|
58.83
|
0.18
|
| |
10
|
63.78
|
58.92
|
61.35
|
0.23
|
60.36
|
61.44
|
60.90
|
0.22
|
| |
12
|
61.08
|
63.96
|
62.52
|
0.25
|
64.68
|
59.46
|
62.07
|
0.24
|
| |
14
|
60.36
|
64.86
|
62.61
|
0.25
|
63.78
|
66.49
|
65.14
|
0.30
|
|
Dinuc
|
8
|
59.82
|
59.82
|
59.82
|
0.20
|
61.80
|
52.25
|
57.03
|
0.14
|
| |
10
|
60.54
|
58.20
|
59.37
|
0.19
|
58.74
|
52.97
|
55.86
|
0.12
|
| |
12
|
61.44
|
56.40
|
58.92
|
0.18
|
60.90
|
61.62
|
61.26
|
0.23
|
| |
14
|
60.72
|
65.05
|
62.88
|
0.26
|
60.36
|
65.95
|
63.15
|
0.26
|
|
Trinuc
|
8
|
60.90
|
57.48
|
59.19
|
0.18
|
58.92
|
56.04
|
57.48
|
0.15
|
| |
10
|
55.14
|
61.62
|
58.38
|
0.17
|
59.82
|
53.15
|
56.49
|
0.13
|
| |
12
|
58.92
|
55.14
|
57.03
|
0.14
|
63.24
|
57.12
|
60.18
|
0.20
|
| |
14
|
60.72
|
58.74
|
59.73
|
0.19
|
64.68
|
60.90
|
62.79
|
0.26
|
|
Binary
|
8
|
60.54
|
61.62
|
61.08
|
0.22
|
65.23
|
65.05
|
65.14
|
0.30
|
| |
10
|
61.26
|
63.78
|
62.52
|
0.25
|
67.75
|
63.06
|
65.41
|
0.31
|
| |
12
|
67.57
|
65.05
|
66.31
|
0.33
|
69.55
|
66.13
|
67.84
|
0.36
|
| |
14
|
71.89
|
77.12
|
74.50
|
0.49
|
70.99
|
63.96
|
67.48
|
0.35
|
- Models were developed using composition and binary pattern of different window sizes. Patterns were taken from sequence of Dicer cleavage site of 5p arm (sequence of CP-5p) and 3p arm (sequence of CP-3p) using miRNA.str data.
- CD-5p: Dicer cleavage site at 5p arm, CD-3p: Dicer cleavage site at 3p arm, Mono: Mononucleotide, Dinuc: Dinucleotide, Trinuc: Trinucleotide, Binary: Binary pattern, Sn: sensitivity, Sp: specificity, Ac: accuracy, Mc: Matthews correlation coefficient.
