Table 1 Results of running diploid_align with generated data.
From: Haploid to diploid alignment for variation calling assessment
input size | runtime in seconds | variations | distance |
|---|---|---|---|
10000 | 0.014000 | 95 | 48 |
20000 | 0.054000 | 190 | 90 |
30000 | 0.168000 | 291 | 145 |
40000 | 0.258000 | 382 | 190 |
50000 | 0.446000 | 478 | 236 |
60000 | 0.562000 | 561 | 281 |
70000 | 0.712000 | 656 | 329 |
80000 | 1.122000 | 745 | 377 |
90000 | 1.262000 | 843 | 419 |
100000 | 1.748000 | 931 | 460 |
1000000 | 148.619995 | 10051 | 4983 |