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Table 3 Five-fold cross validation results on pThr MDDLogo-clustered SVM models.

From: ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins

SVM model Number of positive data Number of negative data Cost value Gamma value Sn Sp Acc MCC
All data 54 54 2 0.125 0.70 0.70 0.70 0.40
Subgroup T1 19 19 2 0.125 0.95 0.90 0.92 0.84
Subgroup T2 19 19 2 0.03125 0.95 0.95 0.95 0.89
Subgroup T3 16 16 0.5 0.125 0.68 0.75 0.72 0.44
Combined performance      0.83 0.80 0.81 0.63