Skip to main content

Table 6 Comparisons of different methods on human data

From: Identifying conserved protein complexes between species by constructing interolog networks

Method

# Predicted complexes

# Matched predictions

Precision

# Gold standard conserved complexes

# Detected conserved complexes

Recall (of conserved complexes)

COCIN

71

36

50.7%

118

78

66.1%

CMC

1389

156

11.2%

118

66

55.9%

HACO

1290

80

6.2%

118

36

30.5%

MCL

631

45

7.1%

118

24

20.3%

  1. Predicted complexes: resulting network clusters
  2. Matched predictions: resulting network clusters that match with benchmarks
  3. Precision = #matched prediction/#predicted complexes
  4. Recall = # detected conserved complexes/# gold standard conserved complexes
  5. One predicted complex of COCIN can match with many benchmark complexes, this explains for #detected conserved complexes > #matched predictions (as illustrated in Figures 5-8)