Skip to main content

Table 8 Summary of Experimental Setup

From: Rigidity analysis of protein biological assemblies and periodic crystal structures

Step Description
Selection and Curation 324 PDB files selected for analysis
Building of Crystal Lattice supercell.py and custom scripts were used to apply symmetry and translation operations on each protein's asymmetric unit
Performing Rigidity Analysis The KINARI software was used to calculate the rigid regions of the asymmetric unit and crystal lattices of each protein
Identifying Rigid Clusters The rigidity results were analyzed to determine if interactions of unit cells led to larger rigid clusters.