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Figure 3 | BMC Bioinformatics

Figure 3

From: Visual cavity analysis in molecular simulations

Figure 3

Implicit clipping plane and contour enhancement. Left: The implicit function evaluates the molecular surface (green). It takes into account only atoms that intersect the plane or lie in the half-space defined by the plane (arrows). Middle: Proteinase 3 is colored according to the amino acids, while for the clipped surface the flat shading model is employed. Right: An example of changing the width of contours.

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