Table 4 Sensitivity and PPV for different ncRNA families
From: Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM
Sensitivity | PPV | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
RNA Type | Len⊕ | TS* | Knot-Structure | IP-knot | Turbo-Knot | Hx-match | Knot-Structure | IP-knot | Turbo-Knot | Hx-match |
HDV_ribozyme | 89.70 | 12 | 82.52 | 50.66 | 36.47 | 23.51 | 80.13 | 59.24 | 39.28 | 39.77 |
Alpha_RBS | 110.99 | 18 | 74.36 | 46.59 | 46.24 | 24.49 | 40.59 | 25.34 | 23.70 | 22.19 |
Tombus_3_IV | 91.61 | 4 | 84.00 | 65.91 | 72.00 | 80.00 | 83.14 | 78.02 | 73.47 | 90.91 |
Tymo_tRNA-like | 85.12 | 3 | 96.79 | 76.41 | 83.52 | 75.09 | 90.25 | 73.62 | 86.85 | 90.11 |
Corona_FSE | 82.91 | 9 | 96.14 | 56.55 | 56.55 | 73.27 | 75.65 | 60.51 | 42.19 | 92.30 |
Prion_pknot | 40.46 | 114 | 40.17 | 13.70 | 2.96 | 30.26 | 32.85 | 15.71 | 3.03 | 28.86 |