Table 1 Mapping of circadian clock genes from S. elongatus to Cyanothece via Blast search with default parameters.
From: A model of the circadian clock in the cyanobacterium Cyanothece sp. ATCC 51142
S. elongatus | Cyanothece | E-value | Cyanothece homolog description (BioCyc [11]) |
|---|---|---|---|
synpcc7942_1218: kaiA | cce_0424 | 5e-66 | KaiA, circadian clock protein |
synpcc7942_1217: kaiB | cce_0423 | 8e-44 | KaiB1, circadian clock protein |
| Â | cce_4715 | 3e-23 | KaiB2, putative circadian clock protein |
| Â | cce_0435 | 6e-18 | KaiB3, circadian clock protein |
| Â | cce_0145 | 4e-12 | KaiB4, putative circadian clock protein |
synpcc7942_1216: kaiC | cce_0422 | 0.0 | KaiC1, circadian clock protein |
| Â | cce_4716 | 1e-137 | KaiC2, circadian clock protein |
synpcc7942_0624: LdpA (light dependent period) | cce_2350 | 6e-76 | putative alpha-helical ferredoxin |
synpcc7942_0644: CikA (circadian input kinase) | cce_4751 | 1e-129 | two-component hybrid sensor and regulator |
| Â | cce_4289 | 7e-67 | two-component hybrid sensor and regulator |
| Â | cce_1138 | 2e-59 | two-component hybrid sensor and regulator |
| Â | cce_0164 | 1e-52 | two-component sensor histidine kinase |
| Â | cce_0220 | 4e-52 | two-component sensor histidine kinase |
| Â | cce_2232 | 3e-46 | two-component sensor histidine kinase |
| Â | cce_1185 | 7e-46 | two-component hybrid sensor and regulator |
synpcc7942_1168: CpmA (circadian phase modifier) | cce_2642 | 6e-67 | circadian phase modifier CpmA-like protein |
synpcc7942_0677: Pex (period extender) | - | - | - |
synpcc7942_1891: LabA (low-amplitude and bright protein) | cce_3317 | 7e-78 | hypothetical protein |
| Â | cce_1947 | 1e-22 | hypothetical protein |
synpcc7942_2114: SasA (histidine kinase) | cce_1751 | 9e-81 | adaptive-response sensory histidine kinase |
| Â | cce_2546 | 3e-27 | two-component sensor histidine kinase |
| Â | cce_0888 | 4e-25 | two-component sensor histidine kinase |
synpcc79427942_0095: RpaA (response regulator) | cce_0298 | 1e-121 | rpaA two-component response regulator |
| Â | cce_4002 | 1e-47 | rpaB two-component response regulator |
| Â | cce_0970 | 9e-43 | two-component transcription regulator |
| Â | cce_1725 | 2e-41 | two-component transcriptional regulatory protein |
| Â | cce_0817 | 2e-41 | two component transcriptional regulator |