TY - JOUR AU - Smith, A. d. a. m. PY - 2003 DA - 2003// TI - Protein misfolding JO - Nature Reviews Drug Discovery VL - 426 ID - Smith2003 ER - TY - JOUR AU - Dobso, C. M. PY - 2003 DA - 2003// TI - Protein folding and misfolding JO - Nature VL - 426 UR - https://doi.org/10.1038/nature02261 DO - 10.1038/nature02261 ID - Dobso2003 ER - TY - JOUR PY - 2005 DA - 2005// TI - So much more to know JO - The Science VL - 309 ID - ref3 ER - TY - JOUR AU - Bonneau, R. AU - Baker, D. PY - 2001 DA - 2001// TI - Ab initio protein structure prediction: progress and prospects JO - Annual Review of Biophysics and Biomolecular Structure VL - 30 UR - https://doi.org/10.1146/annurev.biophys.30.1.173 DO - 10.1146/annurev.biophys.30.1.173 ID - Bonneau2001 ER - TY - JOUR AU - Rohl, C. AU - Strauss, C. AU - Misura, K. AU - Baker, D. PY - 2004 DA - 2004// TI - Protein structure prediction using ROSETTA JO - Methods in Enzymology VL - 383 UR - https://doi.org/10.1016/S0076-6879(04)83004-0 DO - 10.1016/S0076-6879(04)83004-0 ID - Rohl2004 ER - TY - CHAP AU - Lee, J. AU - Wu, S. AU - Zhang, Y. PY - 2009 DA - 2009// TI - Ab initio protein structure prediction BT - From Protein Structure to Function with Bioinformatics UR - https://doi.org/10.1007/978-1-4020-9058-5_1 DO - 10.1007/978-1-4020-9058-5_1 ID - Lee2009 ER - TY - CHAP AU - Xia, Y. AU - Huang, E. S. AU - Levitt, M. AU - Samudrala, R. PY - 2008 DA - 2008// TI - Ab initio construction of protein tertiary structures using a hierarchical approach BT - Journal of Molecular Biology ID - Xia2008 ER - TY - CHAP AU - Shatabda, S. AU - Newton, M. AU - Pham, D. N. AU - Sattar, A. PY - 2012 DA - 2012// TI - Memorybased local search for simplified protein structure prediction BT - Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine UR - https://doi.org/10.1145/2382936.2382980 DO - 10.1145/2382936.2382980 ID - Shatabda2012 ER - TY - JOUR AU - Cebrián, M. AU - Dotú, I. AU - Van Hentenryck, P. AU - Clote, P. PY - 2008 DA - 2008// TI - Protein structure prediction on the face centered cubic lattice by local search JO - Proceedings of the Conference on Artificial Intelligence VL - 1 ID - Cebrián2008 ER - TY - CHAP AU - Dotu, I. AU - Cebrián, M. AU - Van Hentenryck, P. AU - Clote, P. PY - 2011 DA - 2011// TI - On lattice protein structure prediction revisited BT - IEEE Transactions on Computational Biology and Bioinformatics ID - Dotu2011 ER - TY - CHAP AU - Hoque, M. T. AU - Chetty, M. AU - Sattar, A. PY - 2007 DA - 2007// TI - Protein folding prediction in 3D FCC HP lattice model using genetic algorithm BT - IEEE Transactions on Computational Biology and Bioinformatics ID - Hoque2007 ER - TY - CHAP AU - Böckenhauer, H. J. AU - Ullah, A. Z. M. D. AU - Kapsokalivas, L. AU - Steinhöfel, K. PY - 2008 DA - 2008// TI - A local move set for protein folding in triangular lattice models BT - WABI PB - Lecture Notes in Computer Science CY - Springer ID - Böckenhauer2008 ER - TY - CHAP AU - Rashid, M. A. AU - Shatabda, S. AU - Newton, M. AU - Hoque, M. T. AU - Pham, D. N. AU - Sattar, A. PY - 2012 DA - 2012// TI - Random-walk: a stagnation recovery technique for simplified protein structure prediction BT - Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine UR - https://doi.org/10.1145/2382936.2383043 DO - 10.1145/2382936.2383043 ID - Rashid2012 ER - TY - JOUR AU - Levinthal, C. PY - 1968 DA - 1968// TI - Are there pathways for protein folding? JO - Journal of Medical Physics VL - 65 ID - Levinthal1968 ER - TY - JOUR AU - Anfinsen, C. B. PY - 1973 DA - 1973// TI - The principles that govern the folding of protein chains JO - Science VL - 181 UR - https://doi.org/10.1126/science.181.4096.223 DO - 10.1126/science.181.4096.223 ID - Anfinsen1973 ER - TY - JOUR AU - Berger, B. AU - Leightont, T. PY - 1998 DA - 1998// TI - Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete JO - Journal of Computational Biology VL - 5 UR - https://doi.org/10.1089/cmb.1998.5.27 DO - 10.1089/cmb.1998.5.27 ID - Berger1998 ER - TY - JOUR AU - Yue, K. AU - Fiebig, K. M. AU - Thomas, P. D. AU - Chan, H. S. AU - Shakhnovich, E. I. AU - Dill, K. A. PY - 1995 DA - 1995// TI - A test of lattice protein folding algorithms JO - Proceedings of the National Academy of Sciences of the United States of America VL - 92 UR - https://doi.org/10.1073/pnas.92.1.325 DO - 10.1073/pnas.92.1.325 ID - Yue1995 ER - TY - BOOK AU - Glover, F. AU - Laguna, M. PY - 1998 DA - 1998// TI - Tabu search ID - Glover1998 ER - TY - JOUR AU - Glover, F. PY - 1989 DA - 1989// TI - Tabu search - part I JO - ORSA Journal on Computing VL - 1 UR - https://doi.org/10.1287/ijoc.1.3.190 DO - 10.1287/ijoc.1.3.190 ID - Glover1989 ER - TY - JOUR AU - Hales, T. PY - 2005 DA - 2005// TI - A proof of the kepler conjecture JO - The Annals of Mathematics VL - 162 UR - https://doi.org/10.4007/annals.2005.162.1065 DO - 10.4007/annals.2005.162.1065 ID - Hales2005 ER - TY - JOUR AU - Dill, K. A. PY - 1985 DA - 1985// TI - Theory for the folding and stability of globular proteins JO - Biochemistry VL - 24 UR - https://doi.org/10.1021/bi00327a032 DO - 10.1021/bi00327a032 ID - Dill1985 ER - TY - JOUR AU - Lau, K. F. AU - Dill, K. A. PY - 1989 DA - 1989// TI - A lattice statistical mechanics model of the conformational and sequence spaces of proteins JO - Macromolecules VL - 22 UR - https://doi.org/10.1021/ma00200a030 DO - 10.1021/ma00200a030 ID - Lau1989 ER - TY - JOUR AU - Thachuk, C. AU - Shmygelska, A. AU - Hoos, H. H. PY - 2007 DA - 2007// TI - A replica exchange monte carlo algorithm for protein folding in the HP model JO - BMC Bioinformatics VL - 8 UR - https://doi.org/10.1186/1471-2105-8-342 DO - 10.1186/1471-2105-8-342 ID - Thachuk2007 ER - TY - CHAP AU - Tantar, A. A. AU - Melab, N. AU - Talbi, E. G. PY - 2008 DA - 2008// TI - A grid-based genetic algorithm combined with an adaptive simulated annealing for protein structure prediction BT - Soft Computing - A Fusion of Foundations, Methodologies and Applications ID - Tantar2008 ER - TY - CHAP AU - Unger, R. AU - Moult, J. PY - 1993 DA - 1993// TI - A genetic algorithm for 3D protein folding simulations BT - Soft Computing - A Fusion of Foundations, Methodologies and Applications PB - Morgan Kaufmann Publishers CY - The 5th International Conference on Genetic Algorithms ID - Unger1993 ER - TY - CHAP AU - Hoque, M. T. PY - 2007 DA - 2007// TI - Genetic algorithm for ab initio protein structure prediction based on low resolution models BT - PhD thesis PB - Gippsland School of Information Technology, Monash University, CY - Australia ID - Hoque2007 ER - TY - CHAP AU - Klau, G. W. AU - Lesh, N. AU - Marks, J. AU - Mitzenmacher, M. PY - 2002 DA - 2002// TI - Humanguided tabu search BT - Proceedings of the Conference on Artificial Intelligence ID - Klau2002 ER - TY - JOUR AU - Blum, C. PY - 2005 DA - 2005// TI - Ant colony optimization: introduction and recent trends JO - Physics of Life Reviews VL - 2 UR - https://doi.org/10.1016/j.plrev.2005.10.001 DO - 10.1016/j.plrev.2005.10.001 ID - Blum2005 ER - TY - JOUR AU - Cutello, V. AU - Nicosia, G. AU - Pavone, M. AU - Timmis, J. PY - 2007 DA - 2007// TI - An immune algorithm for protein structure prediction on lattice models JO - IEEE Transaction on Evolutionary Computing VL - 11 UR - https://doi.org/10.1109/TEVC.2006.880328 DO - 10.1109/TEVC.2006.880328 ID - Cutello2007 ER - TY - CHAP AU - Patton, A. L. AU - Punch WF, I. I. I. AU - Goodman, E. D. PY - 1995 DA - 1995// TI - A standard GA approach to native protein conformation prediction BT - IEEE Transaction on Evolutionary Computing ID - Patton1995 ER - TY - JOUR AU - Hoque, M. T. AU - Chetty, M. AU - Lewis, A. AU - Sattar, A. AU - Avery, V. M. PY - 2010 DA - 2010// TI - DFS-generated pathways in GA crossover for protein structure prediction JO - Neurocomputing VL - 73 UR - https://doi.org/10.1016/j.neucom.2010.02.021 DO - 10.1016/j.neucom.2010.02.021 ID - Hoque2010 ER - TY - JOUR AU - Hoque, M. T. AU - Chetty, M. AU - Lewis, A. AU - Sattar, A. PY - 2011 DA - 2011// TI - Twin removal in genetic algorithms for protein structure prediction using low-resolutionmodel JO - IEEE Transactions on Computational Biology and Bioinformatics VL - 8 UR - https://doi.org/10.1109/TCBB.2009.34 DO - 10.1109/TCBB.2009.34 ID - Hoque2011 ER - TY - JOUR AU - Yue, K. AU - Dill, K. A. PY - 1993 DA - 1993// TI - Sequence-structure relationships in proteins and copolymers JO - Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics VL - 48 ID - Yue1993 ER - TY - CHAP AU - Lesh, N. AU - Mitzenmacher, M. AU - Whitesides, S. PY - 2003 DA - 2003// TI - A complete and effective move set for simplified protein folding BT - Research in Computational Molecular Biology (RECOMB) ID - Lesh2003 ER -