Table 2 Pseudo-code for Elite Set Methods.
From: The road not taken: retreat and diverge in local search for simplified protein structure prediction
Procedure updateEliteSet() | Procedure selectFromEliteSet() | ||
|---|---|---|---|
1 | sb ← set of second best candidates | 1 | while eliteSet.notEmpty() do |
2 | while sb.notEmpty() do | 2 | c ← eliteSet.getTopElement() |
3 | m ← sb.getNextCandidate() | 3 | e ← getNonIsoEncoding(c) |
4 | c ← getConformation(m) | 4 | b ← getPacked(e) |
5 | e ← getNonIsoEncoding(c) | 5 | if match(b, proximity) == false then |
6 | b ← getPacked(e) | 6 | elitSet.release() |
7 | if match(b, proximity) == false then | 7 | return c |
8 | eliteSet.push(c) | 8 | end |
9 | end | 9 | eliteSet.popElement() |
10 | end | 10 | end |