Skip to main content

Table 5 Effect of Non-Isomorphic Encoding.

From: The road not taken: retreat and diverge in local search for simplified protein structure prediction

Protein

Our Encoding

Relative Encoding

Seq.

runtime

# discards

runtime

# of discards

R1

28.33

354712

39.6

91664

R2

30.4

406572

42.6

91219

R3

25.74

475357

42.6

92765

f180_1

22.90

402738

35.4

103059

f180_2

27.34

317317

39.0

93814

f180_3

24.54

358326

37.8

89810

  1. Comparison in runtime (in minutes) and the numbers of discards while using our non-isomorphic encoding and the relative encoding [32] for first 1 million iterations of the memory-based algorithm by Shatabda et al. [10].
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us