Skip to main content

Table 1 Results of S-S bond determination on a set of Glycosyltransferases using MS-based and sequence-based methods.

From: Protein disulfide topology determination through the fusion of mass spectrometric analysis and sequence-based prediction using Dempster-Shafer theory

Swiss-Prot ID Known S-S bonds Methods that detected the bond Methodology
Q92187 142-292 MassMatrix MS-based
  156-356 MassMatrix MS-based
P02754 82-176 MassMatrix, DisLocate, DiANNA 1.1 MS-based, Sequence-based
  122-135 - -
Q11130 68-176 MassMatrix, PreCys MS-based, Sequence-based (cysteine separation profile)
  211-214 MassMatrix, PreCys As above
  318-321 MassMatrix, PreCys As above
P08037 134-176 MassMatrix MS-based
  247-266 MassMatrix MS-based
Q09324 59-413 - -
  100-172 - -
  151-199 - -
  372-381 - -
P00698 24-145 DISULFIND, DiANNA 1.1 Sequence-based
  48-133 MassMatrix, DiANNA 1.1, DISULFIND MS-based, Sequence-based
P21217 81-338 - -
  91-341 - -
  1. The molecules and their Swiss-Prot ID are: ST8Sia IV [Swiss-Prot:Q92187], Beta-lactoglobulin [Swiss-Prot:P02754], FucT VII [Swiss-Prot:Q11130], C2GnT-I [Swiss-Prot:Q09324], Lysozyme [Swiss-Prot:P00698], FT III [Swiss-Prot:P21217], β1-4GalT [Swiss-Prot:P08037], Aldolase [Swiss-Prot:P00883], and Aspa [Swiss-Prot:Q9R1T5]. The methods investigated include MassMatrix [21], DisLocate [24], DISULFIND [14], PreCys [4], and DiANNA 1.1 [17].
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us