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Table 2 Baseline: the S-S bonds determined by MS2DB+, SVM, and CSP.

From: Protein disulfide topology determination through the fusion of mass spectrometric analysis and sequence-based prediction using Dempster-Shafer theory

Proteins Bonds determined by different methods
  Known Linkages MS2DB+ SVM CSP
ST8Sia IV 142-292 142-292 142-292 142-292
  156-356 156-356 156-356 156-356
Beta-LG 82-176 82-176 - -
  122-135 - 122-135 122-135
   - 137-176 137-176
FucT VII 68-76 68-76 68-76 68-76
  211-214 211-214 211-214 211-214
  318-321 318-321 318-321 318-321
Β1,4-GalT 134-176 134-176 - 134-176
  247-266 247-266 - 247-266
   - 134-247 -
C2GnT-I 59-413 59-413 - -
  372-381 372-381 372-381 -
  100-172 - 100-172 -
  151-199 151-199 - -
   - 199-235 -
   - - 151-217
   - - 172-199
   - - 59-100
Lysozyme 24-145 24-145 24-145 -
  48-133 48-133 - -
   - - 82-98
   - - 94-112
FT III 81-338 81-338 - -
  91-341 - - -
   - 81-91 81-91
   - 338-341 338-341
  1. False positives are indicated in italics.
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BMC Bioinformatics

ISSN: 1471-2105

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