Table 4 Sparse modules in U and T KOG categories for Saccharomyces cerevisia PPI network
From: A novel subgradient-based optimization algorithm for blockmodel functional module identification
KOG ID | Sparse module example | Enriched genes | Enriched GO Term | GO Level | p-value |
|---|---|---|---|---|---|
U | YDR179C, YNL287W, YDL216C YCR099C, YIL004C,YAL026C YLR268W, YLR093C, YPR163C YPR148C, YOL064C, YOL117W YGL084C, YLR031W, YIL076W YPL179W, YKL191W, YPL010W | YOL117W, YDR179C, YDL216C | protein deneddylation | [+8, 0] | 2.01e-5 |
T | YJL092W, YDR490C, YOR231W YJL005W, YPL074W, YPL083C YNL323W,YOL100W | YDR490C, YOL100W, YNL323W, YJL005W, YOR231W | signal transduction | [+3, -1] | 6.09e-5 |
T | YDR076W, YDL059C, YJL173C YPL164C, YER171W, YPL026C YCR079W, YPL150W, YHR169W YJR062C | YDL059C, YPL026C, YER171W, YPL164C, YJL173C, YDR076W | response to endogenous stimulus | [+2, -1] | 4.77e-5 |