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Table 1 Coverage statistics of the CAFA test set.

From: Protein function prediction by massive integration of evolutionary analyses and multiple data sources

Method Coverage of Targets
  Released Assessed MF BP
Orthologous Groups 49.15% 60.84% 61.75% 61.01%
PSI-BLAST 83.83% 90.42% 89.89% 89.45%
Profile-Profile Comparison 99.87% 99.50% 99.73% 99.31%
Amino Acid Trigram Mining 49.64% 47.73% 50.00% 47.25%
Swiss-Prot Text Mining 89.19% 94.96% 95.08% 94.50%
FFPRED 72.40% 56.30% 50.82% 56.65%
FunctionSpace 11.27% 7.56% 6.83% 8.03%
Jones-UCL 100.00% 100.00% 100.00% 100.00%
  1. For each method, the columns report the percent of targets that were assigned GO terms relative to the entire benchmark (Released), the subset officially evaluated (Assessed), the evaluated molecular function predictions (MF), and the assessed biological process assignments (BP).