Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex

BMC Bioinformatics

Table 1 The largest trees for [Daphnia+/Mouse+/Fly-] and [Daphnia+/Mouse-/Fly+].

Root ID ProRoot70	# Daphnia-Mouse proteins^a	ProtoName ProRoot70	General term
4495737	1166	Olfactory receptor	Receptor
4480698	141	Immunoglobulin V-set	Binding-EX
4486320	42	NACHT nucleoside triphosphatase	Enzyme
4486050	33	S100/CaBP, calcium binding	Binding
4380861	31	Crystallin-fold	Fold
4385886	31	Hyaluronic acid binding	Binding-EX
4381234	29	2'-5'-oligoadenylate synthetase 1	Enzyme
4474452	27	Fibronectin type III	Binding-EX
4489975	25	Proteinase inhibitor I25, cystatin	Enzyme
4509859	18	Endoglin/CD105 antigen	Binding-EX
Root ID ProRoot70	# Daphnia-Fruitfly proteins ^a	ProtoName ProRoot70	General term
4490041	57	Insect cuticle protein	Structure
4493131	54	Olfactory receptor, Drosophila	Receptor
4434866	52	Insect cuticle protein	Structure
4476453	28	MADF domain/DNA binding	Binding
4392808	26	Protein of unknown function DUF243
4310716	23	Odorant binding protein	Binding
4425478	16	Protein of unknown function DUF229
4484179	14	Insect pheromone/Odorant binding	Binding
4511439	6	Trehalose/Gustatory receptor	Receptor
4351940	5	Metazoa

^aThe number of proteins is the number in both organisms. EX- enriched in extracellular proteins.

ISSN: 1471-2105