Skip to main content

Advertisement

Table 2 Functional annotations for Daphnia's proteome at ProRoot70 (> 100 paralogs)

From: Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex

Root ID
ProRoot70
# Daphnia proteins (ProRoot70) # Daphnia
proteins (Map10)
Ratioa Functional groupb ProtoName (ProRoot70)
4510706 498 364 1.37 Enzyme Protein kinase
4510983 279 155 1.80 Structure ANK repeat
4507452 228 133 1.71 Interaction WD repeat
4498845 228 104 2.19 Enzyme Peptidase S1A
4508421 186 166 1.12 Interaction Classic Zinc Finger
4490041 169 5 33.80 Structure Insect cuticle protein
4506993 166 52 3.19 Viral RNA-dep. DNA polymerase
4491232 160 8 20.00 Receptor Glutamate receptor-related
4504048 155 80 1.94 Receptor 7TM GPCR, rhodopsin-like
4510005 140 33 4.24 Structure Structural molecule activity
4502875 134 12 11.17 Interaction Kelch related
4510835 128 92 1.39 Receptor ABC transporter-like
4434866 123 3 41.00 Structure Insect cuticle protein
4504753 123 10 12.30 Viral DNA/RNA helicase
4450084 114 2 57.00 Viral HpI Integrase; Chain A
4510417 108 62 1.74 Viral Ribonuclease H-like
4510284 104 53 1.96 Interaction Immunoglobulin-like
4372467 102 5 20.40 Viral MULE transposase, domain
4508558 101 60 1.68 Interaction RNA recognition motif, RNP-1
  1. aRatio, the ratio between the number of proteins and the number of mapped clusters. bViral, indicative of a transposome with a viral origin.