Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs)

BMC Bioinformatics

Table 5 Local structural alignment of the predicted residues for the SG protein from Mycobacterium avium (PDB ID 3q1t) with the corresponding residues of ABDH from Cyanobacterium anabaena.

The spatial positions 1 through 7 correspond to the ordinal values for the top seven residues in the POOL rank order for 3q1t.
Known catalytic residues for ABDH are shown in boldface. Residues predicted by POOL are in uppercase; residues not predicted are in lowercase. Note that the match between the residues of the SG protein and of ABDH is better than that of Table 4.

ISSN: 1471-2105