Protein Function Prediction using Text-based Features extracted from the Biomedical Literature: The CAFA Challenge

Table 2 The GO categories that are used as function classes in this work

Molecular Function		Biological Process
GO ID (#)	GO Category	GO ID (#)	GO Category
0005488	Binding	0065007	biological regulation
0003824	catalytic activity	0032502	developmental process
0030528	transcription regulator activity	0009987	cellular process
0005215	transporter activity	0050896	response to stimulus
0060089	molecular transducer activity	0008152	metabolic process
0030234	enzyme regulator activity	0051234	establishment of localization
0005198	structural molecular activity	0016043	cellular component organization
0016247	channel regulator activity	0023052	Signalling
0009055	electron carrier activity	0032501	Multi-cellular organismal process
0045182	translation regulator activity	0022414	reproductive process
		0051704	multi-organism process
		0040011	Locomotion
		0040007	Growth
		0051179	Localization
		0022610	biological adhesion
		0008283	cell proliferation
		0000003	Reproduction
		0002376	immune system process
		0016265	Death
		0071554	cell wall organization or biogenesis
		0048511	rhythmic process
		0023046	signalling process
		0044085	cellular component biogenesis
		0043473	Pigmentation

ISSN: 1471-2105