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Table 3 Ranking methods by maximal F1 score for various measures.

From: Homology-based inference sets the bar high for protein function prediction

  BPO MFO
  Top-20 Threshold Leaf Top-20 Threshold Leaf
Priors 8 8 11 7 6 11
Priors' 10 10 10 10 10 6
BLAST 9 9 9 6 9 10
GOtcha 6 6 8 2 3 9
StudentA 5 5 5 8 7 5
StudentA' 3 4 4 5 5 2
StudentB 11 11 7 11 11 7
StudentB' 2 2 1 3 4 1
StudentC 7 7 6 9 8 8
StudentC' 4 3 3 4 2 4
MetaStudent' 1 1 2 1 1 3
  1. We calculated the maximum F1 score (Eqn. 1) for each method and curve presented in Figure 5 and ranked the methods accordingly. The number in each cell is the rank of the method in the respective category. As we evaluated 11 different methods, ranks range from 1 (best) to 11 (worst). Results for StudentB were compiled with the bug (Methods).