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Table 3 Average performance of the CE-KEG for energy function of single residue.

From: Prediction of conformational epitopes with the use of a knowledge-based energy function and geometrically related neighboring residue characteristics

Weighting Combinations

SE

SP

PPV

ACC

0%EG+100% GAAP

0.478

0.831

0.266

0.796

10%EG + 90% GAAP

0.463

0.827

0.260

0.790

20%EG + 80% GAAP

0.473

0.827

0.265

0.791

30%EG + 70% GAAP

0.476

0.828

0.268

0.792

40%EG + 60% GAAP

0.483

0.832

0.275

0.796

50%EG + 50% GAAP

0.466

0.831

0.273

0.795

60%EG + 40% GAAP

0.476

0.833

0.280

0.797

70%EG + 30% GAAP

0.485

0.832

0.281

0.797

80%EG + 20% GAAP

0.480

0.830

0.278

0.796

90%EG + 10% GAAP

0.481

0.831

0.275

0.797

100%EG + 0% GAAP

0.463

0.830

0.265

0.795

  1. The performance used combinations of weighting coefficients for the energy (EG) of individual residues and the frequency of occurrence for geometrically related pairs (GAAP). The highest SE is denoted by a bold-italic face.