Table 1 Gene prediction performance on simulated shotgun sequences.
From: Gene prediction in metagenomic fragments based on the SVM algorithm
Methods | Â | 1200 bp | Â | Â | 870 bp | Â | Â | 535 bp | Â | Â | 120 bp | Â |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Sn(%) | Sp(%) | Hm(%) | Sn(%) | Sp(%) | Hm(%) | Sn(%) | Sp(%) | Hm(%) | Sn(%) | Sp(%) | Hm(%) |
MG | 97.7 | 94.8 | 96.3 | 97.4 | 95.2 | 96.3 | 96.9 | 95.4 | 96.1 | 93.2 | 89.6 | 91.4 |
MGC | 98.0 | 95.2 | 96.6 | 97.7 | 95.5 | 96.6 | 97.2 | 95.7 | 96.4 | 93.3 | 90.0 | 91.6 |
MP | 97.5 | 93.6 | 95.5 | 97.2 | 93.5 | 95.3 | 96.8 | 92.9 | 94.8 | 92.0 | 85.5 | 88.7 |
GLM | 98.1 | 93.3 | 95.6 | 97.9 | 93.3 | 95.6 | 97.7 | 93.1 | 95.3 | 94.7 | 88.7 | 91.6 |
MGM | 97.5 | 92.7 | 95.1 | 97.1 | 92.9 | 94.9 | 96.7 | 92.8 | 94.7 | 90.1 | 89.1 | 89.6 |
MGA | 97.4 | 91.7 | 94.4 | 97.2 | 91.4 | 94.2 | 96.8 | 90.5 | 93.5 | 91.3 | 83.7 | 87.4 |
FGS | 95.7 | 87.3 | 91.3 | 95.5 | 88.0 | 91.6 | 95.2 | 88.4 | 91.6 | 90.4 | 82.1 | 86.1 |
Net | 94.6 | 94.7 | 94.6 | 94.1 | 94.7 | 94.4 | 93.3 | 94.6 | 93.9 | 82.0 | 76.4 | 79.1 |