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Table 1 Accuracy evaluation on simulated data.

From: CLASS: constrained transcript assembly of RNA-seq reads

Set Exons Transcripts
  Total Match_ref Match_pred R P Total Match_ref Match_pred R P
ENSEMBL 4401 - - - - 559 - - - -
Paired-end reads
IsoCEM 3070 2231 2230 0.507 0.726 562 284 299 0.508 0.532
Cufflinks 3680 2515 2522 0.571 0.685 738 351 391 0.628 0.530
Scripture 3347 2385 2394 0.542 0.715 954 307 337 0.549 0.353
CLASS 3639 2685 2707 0.610 0.744 748 394 493 0.705 0.659
CLASS0 3639 2685 2707 0.610 0.744 735 389 489 0.696 0.665
Single-end reads
IsoCEM 3114 2242 2247 0.509 0.722 633 292 317 0.522 0.501
Cufflinks 3423 2539 2593 0.577 0.746 666 372 445 0.665 0.668
Scripture 3156 2374 2401 0.539 0.761 658 317 377 0.567 0.573
CLASS 3466 2668 2683 0.606 0.774 635 370 467 0.662 0.735
CLASS0 3466 2668 2683 0.606 0.774 629 373 464 0.667 0.738
  1. Abbreviations: Match_ref = reference transcripts (exons) that match predictions; Match_pred = predicted transcripts (exons) that match the reference; R = recall; P = precision.