Table 1 Correlation coefficients of DE and DS scores and experiment statistics of the four data sets.
From: Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing
Data Set | Corr. Coef. | P-value | Sample Size | Platform | SE/PE | Strand Specific | Read Length | Frag. Size | Tissue |
|---|---|---|---|---|---|---|---|---|---|
Artificial | 0.23 | 0 | 10 v 9 | GAII | - | - | - | - | - |
Cancer | 0.05 | 0 | 20 v 10 | GAII | PE | No | 36 | 200-300 | Prostate |
BA46 | -0.007 | 0.17 | 20 v 20 | SOLiD v4 | SE | Yes | 50 | 200-300 | Brain (BA46) |
BA22 | -0.033 | 3.4e-9 | 9 v 9 | GAII | SE | No | 76 | 200-250 | Brain (BA22) |