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Table 2 The number of significant gene sets on the four data sets at FDR 1% with linear combination strategy.

From: Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing

Dataset GS DS 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 DE
Artificial c2 1550 982 1389 1656 1773 1757 1569 1247 696 261 64
  c5 647 326 479 681 766 747 675 558 354 158 66
Cancer c2 4 3 4 10 14 16 16 16 14 12 12
  c5 11 11 20 14 13 9 6 2 2 1 1
BA46 c2 0 1 1 2 3 3 2 4 3 2 2
  c5 0 2 2 2 2 2 2 2 2 1 0
BA22 c2 0 0 0 0 0 0 0 0 0 0 0
  c5 0 0 0 0 1 1 1 1 0 0 0
  1. For the full results, see Supplementary Tables S1-S4.
  2. GS: gene set category; DS: DS-only GSEA; DE: DE-only GSEA; 0.1,...,0.9: weights α.