From: Joint genotype inference with germline and somatic mutations
Locus | WG genotyping | Exome base calls (A:C:G:T) | QuadGT call | |||||||
---|---|---|---|---|---|---|---|---|---|---|
mutation | quality | N | T | F | M | N | T | F | M | |
chr4:85818319 | GG > AG | 68 | 0:0:8:0 | 2:0:6:0 | 0:0:9:0 | 0:0:9:0 | 0/0 | 0/0 | 0/0 | 0/0 |
chr6:29965983 | TT > CT | 17 | 0:1:0:27 | 0:1:0:25 | 0:3:0:0 | 0:0:0:43 | 0/0 | 0/0 | 0/1 | 0/0 |
chr8:10078796 | GG > CG | 15 | 0:2:1:0 | 0:2:3:0 | 0:5:2:0 | 0:2:4:0 | 0/1 | 0/1 | 0/1 | 0/1 |
chr12:25289551 | CC > TC | 29 | 0:37:0:1 | 0:31:0:2 | 0:57:0:0 | 1:45:0:0 | 0/0 | 0/0 | 0/0 | 0/0 |