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Table 1 H1-ES ChIP-seq enrichment in predicted promoter and enhancer regions.

From: Discovering and mapping chromatin states using a tree hidden Markov model

Promoters
Factor TreeHMM ChromHMM
  All Unique All Unique
Taf1 32,069 (41.6x) 1,489 (15.2x) 35,082 (26.0x) 4,502 (6.7x)
Oct4 4,980 (23.8x) 231 (8.7x) 6,932 (19x) 2,183 (12x)
Klf4 2,622 (18.1x) 105 (5.7x) 3,819 (15.1x) 1,302 (10.3x)
p300 141 (1.0x) 16 (0.9x) 1,597 (6.4x) 1,472 (11.8x)
Nanog 1,556 (1.5x) 227 (1.7x) 8,650 (4.7x) 7,321 (7.7x)
Sox2 412 (1.6x) 63 (2.0x) 2,509 (5.7x) 2,160 (9.8x)
Enhancers
Factor TreeHMM ChromHMM
  All Unique All Unique
Taf1 8,095 (2.5x) 4,293 (4.4x) 5,611 (2.2x) 1,809 (5.3x)
Oct4 3,914 (4.5x) 2,060 (7.8x) 2,274 (3.3x) 420 (4.5x)
Klf4 2,143 (3.6x) 1,294 (7.1x) 1,003 (2.1x) 154 (2.4x)
p300 7,253 (12.2x) 1,517 (8.4x) 5,861 (12.2x) 125 (2.0x)
Nanog 39,829 (9.1x) 7,941 (6.0x) 33,561 (9.6x) 1,673 (3.5x)
Sox2 9,786 (9.4x) 2,185 (6.9x) 7,952 (9.5x) 351 (3.1x)