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Table 1 H1-ES ChIP-seq enrichment in predicted promoter and enhancer regions.

From: Discovering and mapping chromatin states using a tree hidden Markov model

Promoters

Factor

TreeHMM

ChromHMM

 

All

Unique

All

Unique

Taf1

32,069 (41.6x)

1,489 (15.2x)

35,082 (26.0x)

4,502 (6.7x)

Oct4

4,980 (23.8x)

231 (8.7x)

6,932 (19x)

2,183 (12x)

Klf4

2,622 (18.1x)

105 (5.7x)

3,819 (15.1x)

1,302 (10.3x)

p300

141 (1.0x)

16 (0.9x)

1,597 (6.4x)

1,472 (11.8x)

Nanog

1,556 (1.5x)

227 (1.7x)

8,650 (4.7x)

7,321 (7.7x)

Sox2

412 (1.6x)

63 (2.0x)

2,509 (5.7x)

2,160 (9.8x)

Enhancers

Factor

TreeHMM

ChromHMM

 

All

Unique

All

Unique

Taf1

8,095 (2.5x)

4,293 (4.4x)

5,611 (2.2x)

1,809 (5.3x)

Oct4

3,914 (4.5x)

2,060 (7.8x)

2,274 (3.3x)

420 (4.5x)

Klf4

2,143 (3.6x)

1,294 (7.1x)

1,003 (2.1x)

154 (2.4x)

p300

7,253 (12.2x)

1,517 (8.4x)

5,861 (12.2x)

125 (2.0x)

Nanog

39,829 (9.1x)

7,941 (6.0x)

33,561 (9.6x)

1,673 (3.5x)

Sox2

9,786 (9.4x)

2,185 (6.9x)

7,952 (9.5x)

351 (3.1x)