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Table 1 LncRNAs conservation

From: Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements

Dataset

Word Size

Number conserved lncRNAs

Percentage conserved lncRNA

Percentage conserved shuffled

CNS (239)

11

11

4.60%

0.0%

 

10

11

4.60%

0.0%

 

9

11

4.60%

0.0%

 

8

11

4.60%

0.0%

NCNS (420)

11

23

5.40%

0.0%

Ensembl (2,147)

11

250

11.6%

0.0%

  1. The number of lncRNA putatively conserved in each dataset (CNS, NCNS, Ensembl) after applying the query alignment length and e-value cutoffs on the produced alignments.
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BMC Bioinformatics

ISSN: 1471-2105

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