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Table 3 Genomic locations of genes involved in chimeras detected in Body Map 2.0 in [7]

From: State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

Fusion EST

EST source

geneA

chrA

startA

endA

geneB

chrB

startB

endB

BE835085

Li paper [21]

MPHOSPH10

chr2

71,357,444

71,377,232

AES

ch19

3,052,908

3,062,964

AF103493

Li paper [21]

IGKJ1

chr2

89,161,398

89,161,435

IGKV1OR22-1

chr22

17,413,617

17,415,543

ENA|AI400677|AI400677.1

chimerDB_ESTs

ZMYM6NB

chr1

35,447,127

35,450,948

ALB

chr4

74,269,972

74,287,129

ENA|AI805048|AI805048.1

chimerDB_ESTs

FXYD3

chr19

35,606,732

35,615,228

ZFYVE19

chr15

41,099,274

41,106,767

ENA|AV722190|AV722190.1

chimerDB_ESTs

PICALM

chr11

85,668,214

85,780,923

SPP1

chr4

88,896,802

88,904,563

ENA|AW206715|AW206715.1

chimerDB_ESTs

RAMP2

chr17

40,913,212

40,915,059

ZNF3

chr7

99,661,653

99,679,371

ENA|AW316925|AW316925.1

chimerDB_ESTs

GNB2

chr7

100,271,363

100,276,792

QSOX1

chr1

180,123,968

180,167,169

ENA|AW627635|AW627635.1

chimerDB_ESTs

LOC100294406

chr2

89,148,206

89,231,927

RBM10

chrX

47,004,617

47,046,214

ENA|BE903629|BE903629.1

chimerDB_ESTs

CSNK2B

chr6

31,633,657

31,637,843

RPL8

chr8

146,015,154

146,017,805

ENA|BG564612|BG564612.1

chimerDB_ESTs

GSTK1

chr7

142,960,522

142,966,222

HP

chr16

72,088,508

72,094,955

ENA|BG978110|BG978110.1

chimerDB_ESTs

PSMB1

chr6

170,844,204

170,862,417

GSTP1

chr11

67,351,066

67,354,124

ENA|BM559993|BM559993.1

chimerDB_ESTs

HLA-E

chr6

30457183

30,461,982

PPFIBP1

chr12

27,677,045

27,848,497

ENA|BM827569|BM827569.1

chimerDB_ESTs

ELOVL5

chr6

53,132,196

53,213,977

CYBA

chr16

88,709,697

88,717,457

ENA|BP419192|BP419192.1

chimerDB_ESTs

FBLIM1

chr1

16,085,255

16,113,084

AKIP1

chr11

8,932,701

8,941,626

ENA|BQ004985|BQ004985.1

chimerDB_ESTs

F2RL1

chr5

76,114,833

76,131,140

COL1A2

chr7

94,023,873

94,060,544

ENA|BQ010435|BQ010435.1

chimerDB_ESTs

CLSTN1

chr1

9,789,079

9,884,550

LAPTM4A

chr2

20,232,411

20,251,789

ENA|BU684515|BU684515.1

chimerDB_ESTs

NDUFA13

chr19

19,627,019

19,639,013

FLNA

chrX

153,576,900

153,603,006

ENA|CD742870|CD742870.1

chimerDB_ESTs

HLA-G

chr6

29,794,756

29,798,899

PPP1R15A

chr19

49,375,649

49,379,319

ENA|CF125182|CF125182.1

chimerDB_ESTs

PICALM

chr11

85,668,214

85,780,923

CPQ

chr8

97,657,499

98,155,722

ENA|DA932721|DA932721.1

chimerDB_ESTs

CD74

chr5

149,781,200

149,792,332

SCARF1

chr17

1,537,152

1,549,041

ENA|T05374|T05374.1

chimerDB_ESTs

SRPRB

chr3

133,502,877

133,540,336

SLC22A23

chr6

3,269,207

3,456,793

EF051633

chimerDB_ESTmRNAs

PICALM

chr11

85,668,214

85,780,923

MLLT10

chr10

21,823,101

22,032,559

  1. The subset of 22 chimeras encompassing only two genes on different chromosomes, extracted from the 172 events validated by Frenkel-Morgenstern, using the 75 nts single-end reads RNA-seq Body Map 2.0 dataset, was used as positive control of the ability of FusionMap to detect chimers in normal tissues RNA-seq data.