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Table 6 Tree similarity score among compression-based trees and evolutionary trees obtained with Tamura-Nei distance.

From: Alignment-free analysis of barcode sequences by means of compression-based methods

Dataset

PhyloCore

 

NCD

IBD

 

NJ

UPGMA

NJ

UPGMA

ABSMC

0.93

0.95

0.95

0.93

AECI

0.81

0.87

0.82

0.87

AGFDO

0.88

0.92

0.88

0.92

AGFSU

0.86

0.84

0.84

0.89

AGLUO

0.90

0.84

0.90

0.85

AGWEB

0.76

0.73

0.88

0.77

ARCPU

0.90

0.87

0.85

0.87

BACX

0.76

0.80

0.78

0.80

BCUB

0.89

0.90

0.86

0.91

BLSPA

0.80

0.86

0.79

0.85

BRBP

0.90

0.99

0.84

0.99

BSHMT

0.81

0.87

0.73

0.90

CNLVA

0.81

0.91

0.87

0.94

DLTC

0.81

0.86

0.81

0.85

DSALA

0.87

0.91

0.87

0.91

DSANA

0.72

0.91

0.63

0.91

DSFCH

0.68

0.83

0.54

0.80

FBLGO

0.86

0.87

0.84

0.87

FBLOT

0.82

0.89

0.84

0.91

GBFBA

0.80

0.86

0.85

0.87

GZPSE

0.86

0.84

0.85

0.85

JDWAM

0.80

0.88

0.79

0.87

JTB

0.64

0.75

0.65

0.84

MHTRI

0.59

0.89

0.59

0.88

MJMSL

0.83

0.89

0.79

0.89

Onychophora

0.77

0.89

0.81

0.92

PLOCE

0.93

0.95

0.91

0.94

RDMYS

0.60

0.74

0.87

0.77

SIBHI

0.90

0.92

0.92

0.93

WXYZ

0.82

0.79

0.87

0.77

  1. PhyloCore similarity scores of the 30 barcode datasets. The score are obtained comparing compression-based trees, using both NCD and IBD, with evolutionary-based trees, using Tamura-Nei distance. The trees were generated through NJ and UPGMA algorithm.