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Figure 3 | BMC Bioinformatics

Figure 3

From: GAM-NGS: genomic assemblies merger for next generation sequencing

Figure 3

Handling 2-node cycles in Assemblies Graph. A 2-node cycle in AG witness a putative inversion along a single contig in M and S. If there actually is an inversion, then mate-pair reads are aligned with the wrong orientation in one of the two contigs. We can use this information to provide in output a correct sequence (the blue one in the picture).

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