Tool | User (CPU) time | Wall clock time |
---|
Allpaths-LG + CABOG
|
GAM-NGS
| 4h 24' 59" + 1h 14' 41" | 45' 56" + 18' 16" |
GAA | 452h 18' | 14h 16' 4" |
CABOG + Allpaths-LG
|
GAM-NGS
| 4h 24' 59" + 1h 12' 35" | 45' 56" + 19' 21" |
GAA | 467h 40' | 13h 44' 58' |
- In GAM-NGS's entries the first value indicates the time spent in alignment phase, while the second one is GAM-NGS's run time. Due to the size of the assemblies, we parallelized BLAT's execution to get GAA's output in a reasonable time. ZORRO results are not shown due to the fact that the tool cannot run in parallel and, after more than a week of computation, was still not able to provide an output.