Table 3 GAGE statistics (SNPs, indels and misjoins) on Staphylococcus aureus.
From: GAM-NGS: genomic assemblies merger for next generation sequencing
Assembler | SNPs | Indels < 5 bp | Indels ≥ 5 bp | Misjoins | Inv | Reloc |
|---|---|---|---|---|---|---|
Allpaths-LG | 79 | 4 | 12 | 4 | 0 | 4 |
MSR-CA | 191 | 23 | 10 | 13 | 6 | 7 |
Allpaths-LG + MSR-CA | ||||||
GAM-NGS | 137 | 9 | 15 | 5 | 0 | 5 |
GAA | 145 | 8 | 16 | 6 | 0 | 6 |
ZORRO | 133 | 12 | 8 | 6 | 2 | 4 |
MSR-CA + Allpaths-LG | ||||||
GAM-NGS | 214 | 19 | 10 | 9 | 2 | 7 |
GAA | 206 | 22 | 15 | 11 | 2 | 9 |
ZORRO | 262 | 24 | 9 | 7 | 4 | 3 |
Allpaths-LG | 79 | 4 | 12 | 4 | 0 | 4 |
SOAPdenovo | 247 | 25 | 31 | 15 | 1 | 14 |
Allpaths-LG + SOAPdenovo | ||||||
GAM-NGS | 88 | 5 | 14 | 4 | 0 | 4 |
GAA | 100 | 9 | 19 | 10 | 1 | 9 |
ZORRO | 227 | 19 | 12 | 6 | 1 | 5 |
SOAPdenovo+ Allpaths-LG | ||||||
GAM-NGS | 304 | 27 | 29 | 15 | 1 | 14 |
GAA | 314 | 32 | 30 | 12 | 1 | 11 |
ZORRO | 299 | 28 | 11 | 13 | 2 | 11 |