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Table 7 Assembly reconciliation tools performances on Rhodobacter sphaeroides.

From: GAM-NGS: genomic assemblies merger for next generation sequencing

Tool User (CPU) time Wall clock time
Allpaths-LG + MSR-CA
GAM-NGS 1h 21' 09" + 2' 20" 5' 03" + 43"
GAA 17" 17"
ZORRO 14' 46" 14' 46"
MSR-CA + Allpaths-LG
GAM-NGS 1h 21' 09" + 2' 19" 5' 03" + 48"
GAA 19" 19"
ZORRO 16' 15" 16' 15"
Bambus2 + SOAPdenovo
GAM-NGS 1h 26' 47" + 2' 35" 5' 53" + 1' 13"
GAA 3' 59" 3' 59"
ZORRO 8' 22" 8' 22'
SOAPdenovo + Bambus2
GAM-NGS 1h 26' 47" + 2' 23" 5' 53" + 1' 09"
GAA 3' 47" 3' 47"
ZORRO 7' 44" 7' 44"
  1. In GAM-NGS's entries the first value indicates the time spent in alignment phase, while the second one is GAM-NGS's run time.
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