Table 7 Assembly reconciliation tools performances on Rhodobacter sphaeroides.
From: GAM-NGS: genomic assemblies merger for next generation sequencing
Tool | User (CPU) time | Wall clock time |
|---|---|---|
Allpaths-LG + MSR-CA | ||
GAM-NGS | 1h 21' 09" + 2' 20" | 5' 03" + 43" |
GAA | 17" | 17" |
ZORRO | 14' 46" | 14' 46" |
MSR-CA + Allpaths-LG | ||
GAM-NGS | 1h 21' 09" + 2' 19" | 5' 03" + 48" |
GAA | 19" | 19" |
ZORRO | 16' 15" | 16' 15" |
Bambus2 + SOAPdenovo | ||
GAM-NGS | 1h 26' 47" + 2' 35" | 5' 53" + 1' 13" |
GAA | 3' 59" | 3' 59" |
ZORRO | 8' 22" | 8' 22' |
SOAPdenovo + Bambus2 | ||
GAM-NGS | 1h 26' 47" + 2' 23" | 5' 53" + 1' 09" |
GAA | 3' 47" | 3' 47" |
ZORRO | 7' 44" | 7' 44" |